--- a/src/core/model/ref-count-base.h	Tue Jun 11 17:02:23 2013 -0700
+++ b/src/core/model/ref-count-base.h	Tue Jun 11 17:27:05 2013 -0700
@@ -30,6 +30,7 @@
 /**
  * \brief A deprecated way to get reference-counting powers
  *
+ * \deprecated
  * Users who wish to use reference counting for a class of their own should use
  * instead the template \ref ns3::SimpleRefCount. This class is maintained
  * purely for compatibility to avoid breaking the code of users.

--- a/src/core/model/test.h	Tue Jun 11 17:02:23 2013 -0700
+++ b/src/core/model/test.h	Tue Jun 11 17:27:05 2013 -0700
@@ -885,6 +885,7 @@
   void SetDataDir (std::string directory);
 
   /**
+   * \deprecated
    * This method is deprecated. IsStatusFailure replaces it.
    */
   bool GetErrorStatus (void) const NS_DEPRECATED;

--- a/src/internet/helper/ipv6-address-helper.h	Tue Jun 11 17:02:23 2013 -0700
+++ b/src/internet/helper/ipv6-address-helper.h	Tue Jun 11 17:27:05 2013 -0700
@@ -110,6 +110,7 @@
    *  
    * \param network The IPv6 network
    * \param prefix The prefix
+   * \deprecated
    */
   void NewNetwork (Ipv6Address network, Ipv6Prefix prefix) NS_DEPRECATED;
 

--- a/src/internet/model/ipv4-route.h	Tue Jun 11 17:02:23 2013 -0700
+++ b/src/internet/model/ipv4-route.h	Tue Jun 11 17:27:05 2013 -0700
@@ -145,6 +145,7 @@
   /**
    * \param oif outgoing interface
    * \return TTL for this route
+   * \deprecated
    */
   uint32_t GetOutputTtl (uint32_t oif) NS_DEPRECATED;
 

--- a/src/internet/model/ipv6-route.h	Tue Jun 11 17:02:23 2013 -0700
+++ b/src/internet/model/ipv6-route.h	Tue Jun 11 17:27:05 2013 -0700
@@ -200,6 +200,7 @@
    * \brief Get output TTL for this route.
    * \param oif outgoing interface
    * \return TTL for this route
+   * \deprecated
    */
   uint32_t GetOutputTtl (uint32_t oif) NS_DEPRECATED;
 

--- a/src/network/model/packet.h	Tue Jun 11 17:02:23 2013 -0700
+++ b/src/network/model/packet.h	Tue Jun 11 17:27:05 2013 -0700
@@ -340,6 +340,8 @@
    *
    * If you try to change the content of the buffer
    * returned by this method, you will die.
+   *
+   * \deprecated
    * Note that this method is now deprecated and will be removed in
    * a future version of ns-3. To get access to the content
    * of the byte buffer of a packet, call CopyData"()" to perform

--- a/src/uan/model/uan-phy-dual.h	Tue Jun 11 17:02:23 2013 -0700
+++ b/src/uan/model/uan-phy-dual.h	Tue Jun 11 17:27:05 2013 -0700
@@ -95,7 +95,8 @@
   virtual void SetReceiveErrorCallback (RxErrCallback cb);
   virtual void SetRxGainDb (double gain);
   virtual void SetTxPowerDb (double txpwr);
-  virtual void SetRxThresholdDb (double thresh);
+  /** \deprecated Look at PER Functor attribute */
+  virtual void SetRxThresholdDb (double thresh) NS_DEPRECATED;
   virtual void SetCcaThresholdDb (double thresh);
   virtual double GetRxGainDb (void);
   virtual double GetTxPowerDb (void);

--- a/src/wifi/model/wifi-phy-standard.h	Tue Jun 11 17:02:23 2013 -0700
+++ b/src/wifi/model/wifi-phy-standard.h	Tue Jun 11 17:27:05 2013 -0700
@@ -45,9 +45,9 @@
    *  ACM MOBICOM, 2001.
    */
   WIFI_PHY_STANDARD_holland,
-  /** deprecated, see <A HREF="http://www.nsnam.org/bugzilla/show_bug.cgi?id=945">bug 945</A> */
+  /** \deprecated see <A HREF="http://www.nsnam.org/bugzilla/show_bug.cgi?id=945">bug 945</A> */
   WIFI_PHY_STANDARD_80211p_CCH,
-  /** deprecated, see <A HREF="http://www.nsnam.org/bugzilla/show_bug.cgi?id=945">bug 945</A> */
+  /** \deprecated see <A HREF="http://www.nsnam.org/bugzilla/show_bug.cgi?id=945">bug 945</A> */
   WIFI_PHY_STANDARD_80211p_SCH
 };